Database / API & reference standards
API & reference standardsGemcitabine hydrochloride
Gemcitabine hydrochloride is listed in the API and reference-standard collection under CAS 122111-03-9. Its represented structure has formula C9H12ClF2N3O4 and a calculated molecular weight of 299.66 g/mol.
2D chemical structure
Chemical identity
- Catalog name
- Gemcitabine hydrochloride
- Common name
- Gemcitabine hydrochloride
- Chemical name
- 4-amino-1-[(2R,4R,5R)-3,3-difluoro-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one;hydrochloride
- CAS
- 122111-03-9
- SMILES
- Cl.Nc1ccn([C@@H]2O[C@H](CO)[C@@H](O)C2(F)F)c(=O)n1
- InChI
- InChI=1S/C9H11F2N3O4.ClH/c10-9(11)6(16)4(3-15)18-7(9)14-2-1-5(12)13-8(14)17;/h1-2,4,6-7,15-16H,3H2,(H2,12,13,17);1H/t4-,6-,7-;/m1./s1
- InChIKey
- OKKDEIYWILRZIA-OSZBKLCCSA-N
Record ID: A508d132cacec
Computed properties
C9H12ClF2N3O4 Molecular formula
299.661 g/molMolecular weight
299.0484 DaMonoisotopic exact mass
110.6 ŲTopological polar surface area
-0.8668 Calculated LogP (Wildman–Crippen)
62.107 cm³/molMolar refractivity (Wildman–Crippen)
6 countHydrogen-bond acceptors
3 countHydrogen-bond donors
Descriptors are calculated from the displayed SMILES. Calculated LogP is not a measured partition coefficient or a pH-specific LogD. The SMILES contains 2 disconnected components. Calculations retain all represented components.
Molecular descriptor profile
Structural feature counts
Element composition
Radar scale: 0–100 percentile within 25,771 distinct represented structures in this release, using the midpoint rank for ties. Larger values indicate a higher descriptor rank, not greater safety or toxicity. Element counts include hydrogen and combine isotopes under each element.
Radar values and percentile reference
| Descriptor | Value | Percentile |
|---|---|---|
| Molecular weight | 299.661 | 44.13 |
| Calculated LogP (Wildman–Crippen) | -0.8668 | 8.24 |
| Topological polar surface area | 110.6 | 77.74 |
| Hydrogen-bond acceptors | 6 | 75.83 |
| Hydrogen-bond donors | 3 | 81.39 |
| Rotatable bonds (strict) | 2 | 24.16 |
Complete molecular descriptors
| Property | Calculated value | Unit / type |
|---|---|---|
| Molecular formula | C9H12ClF2N3O4 | dimensionless |
| Molecular weight | 299.661 | g/mol |
| Monoisotopic exact mass | 299.0484 | Da |
| Topological polar surface area | 110.6 | Ų |
| Calculated LogP (Wildman–Crippen) | -0.8668 | dimensionless |
| Molar refractivity (Wildman–Crippen) | 62.107 | cm³/mol |
| Hydrogen-bond acceptors | 6 | count |
| Hydrogen-bond donors | 3 | count |
| Rotatable bonds (strict) | 2 | count |
| Heavy atoms | 19 | count |
| Heteroatoms | 10 | count |
| Rings | 2 | count |
| Aromatic rings | 1 | count |
| Aliphatic rings | 1 | count |
| Saturated rings | 1 | count |
| Aromatic heterocycles | 1 | count |
| Aliphatic heterocycles | 1 | count |
| Saturated heterocycles | 1 | count |
| Aromatic carbocycles | 0 | count |
| Aliphatic carbocycles | 0 | count |
| Fraction of sp³ carbon atoms | 0.5556 | fraction |
| Formal charge | 0 | e |
| Disconnected components | 2 | count |
| Isotopically specified atoms | 0 | count |
| Potential atom stereocenters | 3 | count |
| Unspecified atom stereocenters | 0 | count |
| Spiro atoms | 0 | count |
| Bridgehead atoms | 0 | count |
| Labute approximate surface area | 111.5871 | Ų |
| Valence electrons | 108 | count |
| Radical electrons | 0 | count |
| Bertz complexity | 512.4832 | index |
| Balaban J | 0 | index |
Ring categories overlap and should not be summed. No toxicity result, PDE, HBEL or acceptable intake is inferred from these descriptors.
Toxicological services and resources for Gemcitabine hydrochloride
PDE, HBEL and impurity assessment for Gemcitabine hydrochloride
For a substance-specific assessment, request a PDE report for Gemcitabine hydrochloride or explore HBEL derivation for Gemcitabine hydrochloride. These services address exposure limits using toxicological evidence and the intended use of the substance.
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Related Altox services and technical resources
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- Permitted daily exposure
- HBEL value
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- Prediction of degradation products and degradation pathways
- Ames prediction and ICH M7 assessment
- Genotoxic impurity assessment
- Mutagenic impurity assessment
- QSAR mutagenicity
- Non-mutagenic impurities assessment
- Qualification of impurities and degradation products
- Read-across
Other catalogue designations with the same represented structure
These are separate catalogue entries; shared structure does not establish interchangeable pharmacopoeial designations.
Identity sources and calculation method
Identifiers originate from the source catalogues and available public identity records. InChI and InChIKey on this page are generated from the displayed SMILES. RDKit validation checks the molecular representation; it does not independently verify every catalogue assignment.
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